*Lewallen, E. A., T. W. Anderson and A. J. Bohonak. 2007. Genetic structure of leopard shark (Triakis semifasciata) populations in California waters. Marine Biology 152: 599-609.
Vandergast, A. G., A. J. Bohonak, D. B. Weissman and R. N. Fisher. 2007. Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus). Molecular Ecology 16: 977-992.
*Viaud-Martinez, K. A., *M. Martinez Vergara, P. E. Gol’din, V. Ridoux, A. A. Öztürk, B. Öztürk, P. E. Rosel, A. Frantzis, A. Komnenou and A. J. Bohonak. 2007. Morphological and genetic differentiation of the Black Sea harbour porpoise Phocoena phocoena. Marine Ecology Progress Series 338: 281–294.
*Zickovich, J. M. and A. J. Bohonak. 2007. Dispersal ability and genetic structure in aquatic invertebrates: a comparative study in southern California streams and reservoirs. Freshwater Biology 52: 1982-1996.
Bohonak, A. J., M. D. Holland, B. Santer, M. Zeller, C. M. Kearns and N. G. Hairston, Jr. 2006. The population genetic consequences of diapause in Eudiaptomus copepods. Archiv für Hydrobiologie 167: 183-202.
Bohonak, A. J. 2005. Genetic drift. in Encyclopedia of Life Sciences. John Wiley and Sons, Ltd. http://www.els.net/ [doi: 10.1038/npg.els.0005440]
***Jensen, J. L., A. J. Bohonak and S. T. Kelley. 2005. Isolation by Distance Web Service. BMC Genetics 6: 13. visit IBDWS web site
Bohonak, A. J., B. P. Smith and M. Thornton. 2004. Distributional, morphological and genetic consequences of dispersal for temporary pond water mites. Freshwater Biology 49: 170-180.
Mun, J., A. J. Bohonak and G. K. Roderick. 2003. Population structure of the pumpkin fruit fly Bactrocera depressa (Tephritidae) in Korea and Japan: Pliocene allopatry or recent invasion?
Molecular Ecology 12: 2941-2951.
Bohonak, A. J. and D. G. Jenkins. 2003. Ecological and evolutionary significance of dispersal by freshwater invertebrates. Ecology Letters 6: 783-796. Invited Review
Bohonak, A. J. 2002. IBD (Isolation By Distance): A program for analyses of isolation by distance. Journal of Heredity 93: 153-154. download software
Bohonak, A. J., N. Davies, F. X. Villablanca, and G. K. Roderick. 2001. Invasion genetics of New World medflies: testing alternative colonization scenarios. Biological Invasions 3: 103-111.
Bohonak, A. J., and G. K. Roderick. 2001. Dispersal of invertebrates among temporary ponds: are genetic estimates accurate? Israel Journal of Zoology 47: 367-386. (Special Issue: Ecology of temporary pools)
Bohonak, A. J. 1999. Dispersal, gene flow and population structure. Quarterly Review of Biology 74: 21-45.
Bohonak, A. J. and H. H. Whiteman. 1999. Dispersal of the fairy shrimp Branchinecta coloradensis (Anostraca): effects of hydroperiod and salamanders. Limnology and Oceanography 44: 487-493.
Bohonak, A. J. 1999. Effect of insect-mediated dispersal on the genetic structure of postglacial water mite populations. Heredity 82: 451-461.
Hairston, N. G., Jr., L. J. Perry, A. J. Bohonak, M. Q. Fellows, C. M. Kearns and D. R. Engstrom. 1999. Population biology of a failed invasion: paleolimnology of Daphnia exilis in upstate New York. Limnology and Oceanography 44: 477-486.
Wissinger, S. A., A. J. Bohonak, H. H. Whiteman and W. S. Brown. 1999. Subalpine wetlands in Colorado: habitat permanence, salamander predation, and invertebrate communities. Pages 757-790 in D. P. Batzer, R. B. Rader and S. A. Wissinger, editors. Invertebrates in Freshwater Wetlands of North America: Ecology and Management. John
Wiley and Sons, New York.
Bohonak, A. J. 1998. Genetic population structure of the fairy shrimp Branchinecta coloradensis (Anostraca) in the Rocky Mountains of Colorado. Canadian Journal of Zoology 76: 2049-2057.
Bohonak, A. J., N. Davies, G. K. Roderick and F. X. Villablanca. 1998. Is population genetics mired in the past? Trends in Ecology and Evolution 13: 360.
Hairston, N. G., Jr., and A. J. Bohonak. 1998. Copepod reproductive strategies: life-history theory, phylogenetic pattern and invasion of inland waters. Proceedings of the Sixth International Conference
on Copepoda. Journal of Marine Systems 15: 23-34.
Roderick, G. K., N. Davies, A. J. Bohonak and F. X. Villablanca. 1998. The interface of population genetics and systematics: invasion genetics of the Mediterranean fruit fly (Ceratatis capitata). Pages 489-499 in M. P. Zalucki, R. A. I. Drew and G. G. White, editors. Proceedings of the 6th Australasian Applied Entomological Research Conference, University
of Queensland, Brisbane, Australia. University of Queensland Printery.
Roderick, G. K., N. Davies , A. J. Bohonak and F. X. Villablanca. 1998. Origins of Medflies trapped in California. Pages 21-25 in J. G. Morse and R. V. Dowell, editors. Proceedings of the Exotic Fruit Fly Research Symposium. Regents of the University of California, Riverside, California.
McClure, M. and A. J. Bohonak. 1995. Non-selectivity in extinction of bivalves in the late Cretaceous of the Atlantic and Gulf Coastal Plain of North America. Journal of Evolutionary Biology 8: 779-794.
Whiteman, H. H., S. A. Wissinger and A. J. Bohonak. 1994. Seasonal movement patterns in a subalpine population of the tiger salamander, Ambystoma tigrinum nebulosum. Canadian Journal of Zoology 72: 1780-1787.
