Recent News
Recent Publications
EB Newsletter
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Recent Publications in Evolutionary Biology at SDSU
2011 / 2010 / 2009 / 2008 / 2007 / 2006
[Bold=EB faculty and students; *=graduate students; **=undergraduate students]
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2011
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| Baldo, L., A. de Queiroz, M. Hedin, C. Hayashi, and J. Gatesy. 2011. Nuclear-mitochondrial sequences as witnesses of past interbreeding and population diversity in the jumping bristletail Mesomachilis. Molecular Biology and Evolution 28, 195-210. |
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Berta, A. 2011. (Review of). Carnivoran Evolution (eds. A. Goswami and A. Friscia), Cambridge University Press, Systematic Biology 60(2): 241-243.
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Berta, A. and M. Churchill*. 2011. Pinniped taxonomy: review of the evidence for description of currently recognized pinniped species and subspecies. Mammal Review doi: 10.1111/j.1365-2907.2011.00193.x
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| Bohonak, A. J. and E. T. Bauder. In press. Accuracy of a hydrogeomorphic guidebook for functional assessment of vernal pools in southern California. in D. G. Alexander and R. A. Schlising (Editors), Research and Recovery in Vernal Pool Landscapes. Studies from the Herbarium, Number 16. California State University, Chico. CA. |
Bohonak, A. J. and A. G. Vandergast. 2011. The value of DNA sequence data for studying landscape genetics. Molecular Ecology 20: 2477-2479.
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Carney, L. T.*, A. J. Bohonak, M. S. Edwards and F. Alberto. in press. Genetic and experimental support for a gametophyte bank of mixed age and origin in a southern California kelp forest. Ecology.
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Churchill, M.*, A. Berta, and T. Deméré. 2011. The systematics of right whales (Mysticeti: Balaenidae). Marine Mammal Science doi: 10.1111/j.1748-7692.2011.00504x.
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| Derkarabetian, S.*, J. Ledford, and M. Hedin. 2011. Genetic diversification without obvious genitalic morphological divergence in harvestmen (Opiliones, Laniatores, Sclerobunus robustus) from montane sky islands of western North America. Molecular Phylogenetics and Evolution 61, 844-853. |
| Ekdale, E., A Berta, and T. Deméré. 2011. The comparative osteology of the petrotympanic complex in extant baleen whales (Cetacea: Mysticeti). PLoS ONE 6(6): e21311.doi:10.1371/journal.pone.0021311. |
Galatius, A., A. Berta, M.S. Frandsen, R. N. P. Goodall. 2011. Interspecific variation in ontogeny and paedomorphosis among phocoenids. Jour. Morphology 272(2): 136-148.
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| Guilliams, C. M.*, M. G. Simpson, and J. P. Rebman. 2011. Calyptridium parryi var. martirense (Montiaceae), a new taxon endemic to the Sierra San Pedro Mártir, Baja California, Mexico. Madroño, in press. |
Hasenstab, K. E.* and M. G. Simpson. In press. Cat’s eyes and popcorn flowers: Phylogenetic systematics of the genus Cryptantha s.l. (Boraginaceae). Systematic Botany.
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Hedin, M. and D. Carlson**. 2011. A new trapdoor spider species from the southern Coast Ranges of California (Mygalomorphae, Antrodiaetidae, Aliatypus coylei, nov sp), including consideration of mitochondrial phylogeographic structuring. Zootaxa 2963, 55-68.
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| Johnston, C.* and A. Berta. 2011. Comparative anatomy and evolutionary history of suction feeding in cetaceans. Marine Mammal Science 27(3): 493-513. |
McKenna, M.F.*, T.W. Cranford. N.D. Peyenson, and A. Berta. 2011. Comparative morphology of the odontocete melon: implications for sound production and evolutionary interpretations. Marine Mammal Science doi: 10.1111/j.1748-7692.2011.00526.x
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Robles-Sikisaka, R.*, A. J. Bohonak, L. McClenaghan and A. Dhar. 2010. Genetic signature of rapid IHHNV (Infectious Hypodermal and Hematopoeitic Necrosis Virus) expansion in wild Penaeus shrimp populations. PLoS ONE 5: e11799.
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Satler, J.*, J. Starrett, C. Hayashi, and M. Hedin. 2011. Inferring species trees from gene trees in a radiation of California trapdoor spiders (Araneae, Antrodiaetidae, Aliatypus). PLoS ONE 6(9): e25355. doi:10.1371/journal.pone.0025355.
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Walsh, B.* and A. Berta. 2011. Occipital ossification of balaenopteroid mysticetes. The Anatomical Record doi: 10.002/ar.21340.
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Walsh, B.* and A. Berta. 2011. Occipital ossification of balaenopteroid mysticetes. The Anatomical Record doi: 10.002/ar.21340.
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2010
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Benet-Pierce, N. and M. G. Simpson. 2010. Chenopodium littoreum (Chenopodiaceae): a new goosefoot from dunes of south-central coastal California. Madroño 57: 64–72.
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Derkarabetian, S.*, D. B. Steinmann, and M. Hedin. 2010. Repeated and time-correlated morphological convergence in cave-dwelling harvestmen (Opiliones, Laniatores) from montane western North America. PLoS ONE, 5(5), e10388.
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Hedin, M., S. Derkarabetian*, M. McCormack*, C. Richart*, and J.W. Shultz. 2010. The phylogenetic utility of the nuclear protein-coding gene EF-1a for resolving recent divergences in Opiliones, emphasizing intron evolution. Journal of Arachnology 38: 9-20.
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Hedin, M. and S.M. Thomas*. 2010. Molecular systematics of eastern North American Phalangodidae (Arachnida: Opiliones: Laniatores), demonstrating convergent morphological evolution in caves. Molecular Phylogenetics and Evolution 54: 107-121.
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| Johnston, C.*, T. Deméré, A. Berta, J. St. Leger, and J. Yonas. 2010. Observations on the musculoskeletal anatomy of the head of a neonate gray whale (Eschrichtius robustus). Marine Mammal Science, 26(1): 186-194. |
| Lovette, I. J., J. L. Pérez-Emán, J. Sullivan, R. C. Banks, I. Fiorentino, S. Córdoba-Córdoba, M. Echeverry-Galvis, F. K. Barker, K. J. Burns, J. Klicka, S. M. Lanyon, and E. Bermingham. 2010. A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Molecular Phylogenetics and Evolution (in press). |
Sanchez, A.* and A. Berta. 2010. The comparative anatomy and evolution of the odontocete flipper. Marine Mammal Science, 26(1): 140-160.
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| Sedano, R. E.* and Burns, K. J. 2010. Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini). Journal of Biogeography 37: 325-343. |
Snowman, C.V., K.S. Zigler, and M. Hedin. 2010. Caves as Islands: Mitochondrial phylogeography of the cave-obligate spider species Nesticus barri (Araneae: Nesticidae). Journal of Arachnology 38, 49-57.
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Simpson, M. G. 2010. Plant Systematics, 2nd edition. Elsevier-Academic Press.
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Simpson, M. G., M. Silveira*, and C. M. Guilliams.* 2010. Taxonomy of Calyptridium parryi (Montiaceae). Madroño 57: 154-160.
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2009
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Bauder, E. T., A. J. Bohonak, B. Hecht, M. A. Simovich, D. Shaw, D. G. Jenkins, and M. Rains. 2009. A Draft Regional Guidebook for Applying the Hydrogeomorphic Approach to Assessing Wetland Functions of Vernal Pool Depressional Wetlands in Southern California. San Diego State University, San Diego, CA. http://www.bio.sdsu.edu/pub/andy/vernalpools/index.html
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Burns, K. J. and R. A. Racicot*. 2009. Molecular phylogenetics of a clade of lowland tanagers: Implications for avian participation in the Great American Interchange. The Auk 126: 635-648.
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Hedin, M. and M. Lowder*. 2009. Phylogeography of the Habronattus amicus species complex (Araneae: Salticidae) of western North America, with evidence for localized asymmetrical mitochondrial introgression. Zootaxa 2307, 39-60.
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Holzman, J. P.*, A. J. Bohonak, L. R. Kirkendall, D. Gottlieb, A. R. Harari, and S. T. Kelley. 2009. Inbreeding variability and population structure in the invasive haplodiploid palm-seed borer (Coccotrypes dactyliperda). Journal of Evolutionary Biology 22: 1076-1087.
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Mauck, W. M.* and K. J. Burns. 2009. Phylogeny, biogeography, and recurrent evolution of divergent bill types in the nectar-stealing flowerpiercers (Thraupini: Diglossa and Diglossopis). Biological Journal of the Linnean Society 98: 14-28.
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Pierce, N. and M. G. Simpson. 2009. Polyaperturate pollen types and ratios of heteromorphism in the monocot genus Conostylis R. Br. (Haemodoraceae). Australian Systematic Botany 22: 16-30.
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Reeder, T. W., and J. D. Reichert*. Phylogenetic relationships within the Australian limb-reduced lizard genus Hemiergis (Scincidae; Squamata) based on mitochondrial rRNA gene sequences. Copeia, in press.
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Simpson, M. G. and K. E. Hasenstab*. 2009. Cryptantha of Southern California. Crossosoma 35: 1-59.
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Steele, A. N.*, M. A. Simovich, D. Pepino, K. McNamara Schroeder, A. G. Vandergast and A. J. Bohonak. 2009. Optimized DNA extraction methods for encysted embryos of the endangered fairy shrimp, Branchinecta sandiegonensis. Conservation Genetics 10: 1777-1781.
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Turner, J. L., S. T. Kelley, J. S. Otto, F. Valafar and A. J. Bohonak. 2009. Parallelization and optimization of genetic analyses in Isolation by Distance Web Service. BMC Genetics 10: 29.
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Vandergast, A. G., D. Wood, M. A. Simovich and A. J. Bohonak. 2009. Identification of co-occurring Branchinecta fairy shrimp species from encysted embryos using multiplex PCR. Molecular Ecology Resources 9: 767-770.
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Vandergast, A. G., *E. A. Lewallen, **J. Deas, A. J. Bohonak, D. B. Weissman, and R. N. Fisher. 2009. Loss of genetic connectivity and diversity in urban microreserves in a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus “santa monica”). Journal of Insect Conservation 13: 329-345.
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Wiens, J. J., C. A. Kuczynski, S. Arif, and T. W. Reeder. Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial DNA, and a revised phylogeny of Sceloporus. Molecular Phylogenetics and Evolution, in press.
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2008
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Aevermann B.D*. and Waters E.R. 2008. The duplication and retention of the small heat shock protein gene family in Caenorhabditis elegans and Caenorhabditis briggsae. Genetica. Oct 17 2007; [Epub ahead of print]. Print publication expected Summer 2008.
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Archibald, J. D. 2008. Edward Hitchcock's pre-Darwin (1840) "Tree of life." Journal of the History of Biology. Online First.
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Arenas-Mena, C. 2008. HeBlimp and HeT-Brain expression in an indirectly developing polychaete correlates with endodermal and neural precursors. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. (In press)
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Bohonak, A. J. 2008. Genetic drift in human populations. in Encyclopedia of Life Sciences, cross-listed in Handbook of Human Molecular Evolution. John Wiley and Sons, Ltd. http://www.els.net/
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Clark, R. W., Brown W. S., Stechert, R., and K. W. Zamudio. 2008. Integrating individual behavior and landscape genetics: the population structure of timber rattlesnake hibernacula. Molecular Ecology 17:719-730.
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Crawford, N. G.*, J. Zalidvar-Rae, C. Hagen, A. Schable, E. B. Rosenblum, M. G. Ritchie, T. W. Reeder, J. A. Graves, and T. C. Glenn. 2008. Thirteen polymorphic microsatellite DNA loci from whiptails of the genus Aspidoscelis and related cnemidophorine lizards. Molecular Ecology Resources 8:219-223.
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Deméré, T.A., M. R. McGowen*, A. Berta. and J. Gatesy. 2008. Morphological and molecular evidence for step-wise evolutionary transition from teeth to baleen in mysticete whales. Systematic Biology 57:15-37.
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Deméré, T.A. and A. Berta. 2008. Cranial anatomy of the toothed mysticete Aetiocetus weltoni and its implications for aetiocetid phylogeny. Zoological Journal of Linnean Society 154(2): 308-352.
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de Quieroz, K. and T. W. Reeder. 2008. Squamata – Lizards. In B. I. Crother (ed.), Scientific and Standard English Names of Amphibians and Reptiles of North America North of Mexico, pp. 24–45. SSAR Herpetological Circular No. 37.
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Desnues C.G., B. Rodriguez-Brito*, S. Rayhawk*, S. Kelley, T. Tran*, M. Haynes, H. Liu, D. Hall*, F.E. Angly*, R.A. Edwards, R.B. Thurber, P. Reid, J. Siefert, V. Souza, D.L. Valentine, B.K. Swan, M. Breitbart, F. Rohwer. 2008 (in press). Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature.
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Dinsdale E.A., R.A. Edwards, D. Hall*, F. Angly*, M. Breitbart, J.M. Brulc, M. Furlan*, C. Desnues, M. Haynes, L. Li, L. McDaniel, M.A. Moran , K.E. Nelson, C. Nilsson, R. Olson, J. Paul, B. Rodriguez-Brito*, Y. Ruan, B.K. Swan, R. Stevens, D.L. Valentine, R.V. Thurber, L. Wegley*, B.A. White, and F. Rohwer. 2008 (in press). Functional metagenomic profiling of nine biomes. Nature.
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Ellis, D.*, R.W. Bizzoco, and S.T. Kelley. 2008. Halophilic Archaea identified in fumarole steam vapor from vents around the world. Environmental Microbiology 10: 1582-1590.
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Kunin, V., S. He, F. Warnecke, S.B. Peterson, H.G. Martin, M. Haynes, N. Ivanova, L.L. Blackall, M. Breitbart, F. Rohwer, K.D. McMahon, P. Hugenholtz (2008, in press). A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Research.
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Lutz, K., N. Diaz, R.A. Edwards, F. Rohwer, S.T. Kelley, and J. Stoye. 2008. Taxonomic classification of short environmental DNA fragments. Nucleic Acids Research E-Pub.
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Paquin, P., N. Dupérré, J.C. Cokendolpher, K. White, and M. Hedin. 2008. The fundamental importance of taxonomy in conservation biology: the case of the eyeless Cicurina bandida (Araneae: Dictynidae) of Central Texas, including new synonyms and the description of the male of the species. Invertebrate Systematics 22: 1-11.
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Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T **, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL. 2008. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science. 2008 Jan 4; 319(5859): 64-9.
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Thomas, S.M.* and M. Hedin. 2008. Multigenic phylogeographic divergence in the paleoendemic southern Appalachian opilionid Fumontana deprehendor Shear (Opiliones, Laniatores, Triaenonychidae). Molecular Phylogenetics & Evolution 46: 645-658.
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Townsend T.M., E.R. Alegre*, S.T. Kelley, J.J. Wiens, T.W. Reeder. 2008. Rapid Development of Multiple Nuclear Loci for Phylogenetic Analysis Using Genomic Resources. Molecular Phylogenetics and Evolution 47: 129-142.
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Vandergast, A. G., A. J. Bohonak, S. A. Hathaway, J. Boys** and R. N. Fisher. 2008. Are hotspots of evolutionary potential adequately protected in southern California? Biological Conservation 141: 1648-1664.
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Viaud-Martinez, K. A.*, R. L. Brownell, Jr., A. Komnenou and A. J. Bohonak. 2008. Genetic isolation and morphological divergence of Black Sea bottlenose dolphins. Biological Conservation 141: 1600-1611.
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Vink, C.J., M. Hedin, M.R. Bodner, W.P. Maddison, C.Y. Hayashi, and J.E. Garb. 2008. Actin 5C, a promising nuclear gene for spider phylogenetics. Molecular Phylogenetics & Evolution 48: 377-382.
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Waters E.R., B. D. Aevermann*, Z. Sanders-Reed**. 2008. Comparative analysis of the small heat shock proteins in three angiosperm genomes identifies new subfamilies and reveals diverse evolutionary patterns. Cell Stress and Chaperones Published OnLine First. Print publication expected Summer 2008.
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Waters, E.R., S. Nguyen**, R. Eskandar**, J. Behan**, and Z. Sanders-Reed**. 2008. The recent evolution of a pseudogene: diversity and divergence of a mitochondrial-localized small heat shock protein in Arabidopsis thaliana. Genome 51:177-86.
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Wiens, J. J., C. A. Kuczynski, S. A. Smith, D. Mulcahy, J. W. Sites, Jr., T. M. Townsend, and T. W. Reeder. 2008. Branch length, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes. Systematic Biology 57: 420-431.
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| Wood, D. A.*, R. N. Fisher, and T. W. Reeder. 2008. Novel patterns of historical isolation, dispersal, and secondary contact across Baja California in the Rosy Boa (Lichanura trivirgata). Molecular Phylogenetics and Evolution 46:484–502. |
| Zaldivar-Riverón, A., A. Nieto Montes de Oca, N. Manríquez-Morán, and T. W. Reeder. 2008. Phylogenetic affinities of the rare and enigmatic limb-reduced Anelytropsis (Reptilia: Squamata) as inferred from mitochondrial 16S rRNA sequence data. Journal of Herpetology 42:303–311. |
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2007
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Archibald, J. D. and MacLeod, N. 2007. Dinosaurs, extinction theories for. In, Encyclopedia of Biodiversity, Elsevier, p. 1-9.
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Arenas-Mena, C. 2007. Developmental transcriptional-competence model for a histone variant and a unicellular origin scenario for transcriptional-multipotency mechanisms. Evolution & Development. 9: 208-211.
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Arenas-Mena, C. 2007. Embryonic expression of HeFoxA1 and HeFoxA2 in an indirectly developing polychaete. Development Genes and Evolution 216: 727-736.
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Arenas-Mena, C. 2007. Sinistral equal-size spiral cleavage of the indirectly developing polychaete Hydroides elegans. Developmental Dynamics 236: 1611-1622.
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Arenas-Mena, C. and K. S-Y. Wong. 2007. HeOtx expression in an indirectly developing polychaete correlates with gastrulation by invagination. Development, Genes and Evolution. May; 217(5):373-384.
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Arenas-Mena C., Wong, K. S. Y., and N. R. Arandi-Foroshani. 2007. Histone H2A.Z expression in two indirectly developing marine invertebrates correlates with undifferentiated and multipotent cells. Evolution & Development 9: 231-243.
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Arenas-Mena, C., Wong, K. S. Y. and N. Arandi-Forosani. 2007. Ciliary band gene expression patterns in the embryo and trochophore larva of an indirectly developing polychaete. Gene Expression Patterns 7: 544-549.
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Ayoub N.A., J.E. Garb, M. Hedin and C.Y. Hayashi. 2007. Utility of the nuclear protein-coding gene, elongation factor-1 gamma (EF-1g) for spider systematics, emphasizing family level relationships of tarantulas and their kin (Aranaea: Mygalomorphae). Molecular Phylogenetics and Evolution 42: 394-409.
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Burns, K. J., M. P. Alexander*, D. N. Barhoum*, and E. A. Sgariglia*. 2007. A statistical assessment of congruence among phylogeographic histories of three avian species in the California Floristic Province. Pages 96-109 in Festschrift for Ned K. Johnson: Geographic Variation and Evolution in Birds (C. Cicero and J. V. Remsen, Jr., Eds.). Ornithological Monographs, no. 63.
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Clark, R. W. 2007. Public information for solitary foragers: timber rattlesnakes use conspecific chemical cues to select ambush sites. Behavioral Ecology 18:487-490.
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Clark, R. W., Brown W. S., Stechert, R., and K. W. Zamudio. In Press. Integrating individual behavior and landscape genetics: the population structure of timber rattlesnake hibernacula. Molecular Ecology.
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Cooper, L. N.*, A. Berta, J. Reidenberg, and S.D. Dawson. 2007a. Hyperphalangy and digit reduction: evolution of the cetacean manus. Anatomical Record 290: 654-673.
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Cooper, L.N.*, S.D. Dawson, J. Reidenberg and A. Berta. 2007b. Neuromuscular anatomy and the evolution of the cetacean forelimb. Anatomical Record 290: 1121-1137.
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Fierer, N., M. Breitbart, J. Nulton, P. Salamon, C. Lozupone, R. Jones, M. Robeson, R. Edwards, B. Felts, S. Rayhawk*, R. Knight, F. Rohwer, and RB Jackson. 2007. Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Applied and Environmental Microbiology 73(21):7059-7066.
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Klicka, J., K. J. Burns, and G. M. Spellman. 2007. Defining a monophyletic Cardinalini: a molecular perspective. Molecular Phylogenetics and Evolution 45:1014-1032.
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Lee, U., I. Rioflorido*, S.W. Hong, J. Larkindale, E. Waters, and E. Vierling. 2007 The Arabidopsis ClpB/HSP100 family of proteins: Chaperones for stress and chloroplast development. The Plant Journal 49:115-127.
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Lewallen, E. A.*, T. W. Anderson and A. J. Bohonak. 2007. Genetic structure of leopard shark (Triakis semifasciata) populations in California waters. Marine Biology 152: 599-609.
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Mathur*, J., R.W. Bizzoco, D.G. Ellis*, D.A. Lipson, A. Poole*, R. Levine and S.T. Kelley. 2007. Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs. Applied and Environmental Microbiology 73: 2612-2623.
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Renner, T.** and E.R. Waters. 2007 Comparative genomic analysis of the HSP70s in five diverse algal species. Cell Stress & Chaperones 12:172-185.
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Shepherd, T. M.* and K. J. Burns. 2007. Intraspecific genetic analysis of the Summer Tanager (Piranga rubra): Implications for species limits and conservation. Journal of Avian Biology 38: 13-27.
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Smith, S. A., A. Nieto Montes de Oca, T. W. Reeder, and J. J. Wiens. 2007. A phylogenetic perspective on elevational species richness patterns in Middle American treefrogs: why so few species in lowland tropical rainforests? Evolution 61:1188-1207.
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Starrett, J.* and M. Hedin. 2007. Multilocus genealogies reveal multiple cryptic species and biogeographic complexity in the California turret spider Antrodiaetus riversi (Mygalomorphae, Antrodieatidae). Molecular Ecology 16, 583-604.
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Starrett J. * and Waters E.R. 2007. Positive natural selection has driven the evolution of the Hsp70s in Diguetia spiders. Biology Letters 3:439-444.
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Vandergast, A. G., A. J. Bohonak, D. B. Weissman and R. N. Fisher. 2007. Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus). Molecular Ecology 16: 977-992.
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Viaud-Martinez, K. A.*, M. Martinez Vergara*, P. E. Gol’din, V. Ridoux, A. A. Öztürk, B. Öztürk, P. E. Rosel, A. Frantzis, A. Komnenou and A. J. Bohonak. 2007. Morphological and genetic differentiation of the Black Sea harbour porpoise Phocoena phocoena. Marine Ecology Progress Series 338: 281–294.
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Waters, E.R. and I. Rioflorido**. 2007 Evolutionary analysis of the small heat shock proteins in five complete algal genomes. Journal of Molecular Evolution 65:162-174.
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Wegley, L*, R Edwards, B Rodriguez-Brito*, Hong Liu, and F Rohwer. 2007. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environmental Microbiology 9 (11):2707-2719.
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Wiens, J. J., C. A. Kuczynski, W. E. Duellman, and T. W. Reeder. 2007. Loss and re-evolution of complex life cycles in marsupial frogs: Does ancestral trait reconstruction mislead? Evolution 61:1886-1899.
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Winner, A. and M. G. Simpson. 2007. A new subspecies of Pentagramma triangularis (Pteridaceae). Madroño 54:345-353.
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Zickovich, J. M.* and A. J. Bohonak. 2007. Dispersal ability and genetic structure in aquatic invertebrates: a comparative study in southern California streams and reservoirs. Freshwater Biology 52: 1982-1996.
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2006
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Alexander, M. P.* and K. J. Burns. 2006. Intraspecific phylogeography and adaptive divergence in the White-headed Woodpecker. The Condor 108:489-518.
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Angly F., B. Felts, M. Breitbart, P. Salamon, R.A. Edwards, C. Carlson, A.M. Chan, M. Haynes, S. Kelley, H. Liu, J. Mahaffy, J.E. Mueller, J. Nulton, R. Olson, R. Parsons, S. Rayhawk, C.A. Suttle, F. Rohwer. 2006. The marine viromes of four oceanic regions. PLoS Biology 4(11):2121-2131.
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Archibald, J. D. 2006. A cacophony of causes. Review of Extinction: How Life Nearly Ended 250 Million Years Ago by Douglas H. Erwin. Trends in Ecology and Evolution 21:428.
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Archibald, J. D. 2006. Review of Mammals from the Age of Dinosaurs: Origins, Evolution, and Structure. by Zofia Kielan-Jaworowska, Richard L. Cifelli, and Zhe-Xi Luo. Journal of Mammal Evolution 13:147-149.
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Archibald, J. D. and Averianov, A. O. 2006. Late Cretaceous asioryctitherian eutherian mammals from Uzbekistan and phylogentic analysis of Asioryctitheria. Acta Palaeontologca Polonica 51:351-376.
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Arenas-Mena, C., Cameron, R. A., and E. H. Davidson. 2006. Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo. Development Growth & Differentiation 48: 463-472.
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Averianov, A. O. and Archibald, J. D. 2006. Further data on the multituberculate mammal Uzbekbaatar from the Late Cretaceous of Uzbekistan Acta Palaeontologca Polonica. 51:377-380.
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