#NEXUS BEGIN DATA; DIMENSIONS NTAX=13 NCHAR=740; FORMAT INTERLEAVE MISSING=? EQUATE="N=?" EQUATE="R={A,G}" EQUATE="Y={C,T}" EQUATE="M={A,C}" EQUATE="W={A,T}" EQUATE="S={C,G}" EQUATE="K={G,T}" EQUATE="D={A,G,T}" EQUATE="H={A,C,T}" EQUATE="V={A,C,G}" EQUATE="B={C,G,T}" EQUATE="Z={T,-}" EQUATE="X={G,-}" EQUATE="E={A,-}" EQUATE="F={C,-}" EQUATE="J={A,C,-}" EQUATE="P={T,C,-}" SYMBOLS="A~Z 0~9 -"; MATRIX [12S rDNA = 1-251, 16S rDNA = 252-708, morphology = 709-750] [1-50] asio CCGCCAGAAGACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum CCGCCAGAAGACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT coronatum NNNCCAGAANATTACAAGCNAAAAGCTTAAAACTCAAAGGACTTGGCGGT ditmarsi CCGCCAGAAAACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGACGGT hernandesi CCGNCAGAAAACTACAAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT mcallii CCGCCAGAAAACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT modestum TCGCCAGAAAACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT orbiculare CCGCCAGAAAACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT platyrhinos CCGCCAGAAAATTACGAGCGAAGAGCTTAAAACTCAAAGGACTTGGCGGT solare CCGCCAGAAGACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT taurus CCGCCAGAAAACTACGAGCGAAAAGCTTAAAACTCAAAGGACTTGGCGGT ANCESTOR CCGCCAGAAAATTACGAGCGAAAAGCTTTAAACTCAAAGGACTTGGCGGT [51-100] asio GCTCCAT--CCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGTT coronatum GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT ditmarsi GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT hernandesi GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT mcallii GCTCCACGCCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT modestum GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT orbiculare GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT platyrhinos GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT solare GCTCCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGAT taurus GCTTCACACCCGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT ANCESTOR GCTCCATAYCFGACTTAGAGGAGCCTGTCCTATAATCGATACTCCACGCT [101-150] asio AAACCTTACCATTCATTGCCAAAAA-CAGCCTATATACCGCCGTCGCCAA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum AGACCTTTCCACTCATTGCCCAAAATCAGCCTATATACCGCCGTCGCCAA coronatum AAACCTCACCATTCATTGCCAAAGA-CAGCCTATATACCGCCGTCACCAA ditmarsi AAACCCCACCACTCATTGCCGAAA--CAGCCTATATACCGCCGTCGCCAA hernandesi AAACCCCACCACTCATTGCCCAAA--CAGCCTATATACCGCCGTCACCAA mcallii AAACCCCACCACTCATTGCCT????-CAGCCTATATACCGCCGTCACCAA modestum AAACCTCACCACTCATTGCCCAAA--CAGCCTATATACCGCCGTCGCCAA orbiculare AAACCCAACCACTCATTGCCCAAA--CAGCCTATATACCGCCGTCGCCAA platyrhinos AAACCCCACCATTCATTGCCTTAAA-CAGCCTATATACCGCCGTCGCCAA solare AAACCTCACCACCCATTGCCTAAAA-CAGCCTATATACCGCCGTCGCCAA taurus AAACCTCACCATTCATTGCC--AAA-CAGCCTATATACCGCCGTCACCAA ANCESTOR AAACCTCACCAYTCWTTGCCZAAAA-CAGCCTATATACCGCCGTCGCCAA [151-200] asio CTTACCCCATGAGGACTCAACAGTAAGTACAACAGTTAA-CTAACTAAAA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum CCTACCCCATGAGGGTTCAATAGTAGGTTCAATAGTTA--TAAACTAAAA coronatum CTTACCCCATGAGGGTTAAACAGTAAGTACAACAGT-TATTTAACTAAAA ditmarsi CTTACCCCATGAGGGCTTAACAGTAAGTACAATAGCTAA-CTAACTAAAA hernandesi CTTACCCCATGAGGGCTTAACAGTAAGTACAATAGCTAA-TTAACTAAAA mcallii CTTACCCCATAAGGGTCCAACAGTAGGTACAACAGT-AAGCCAACTAAAA modestum CTTACCCCATGAGGGTTCAACAGTAAATATAATAGTCAA-CCTACTAGAA orbiculare CTTACCCCATAAGGG-TCAACAGTAAGTACAATAGCCAA-TTAGCTAAAA platyrhinos CTTACCCCATGAGGGCCAAACAGTAAGTATAACAGT-ATTTTTACTAAAA solare CTTACCCCATGAGGGCTTAATAGTAAGTACAATAGTACG-TCAACTAAAA taurus CTTACCCCATGAGGGCTCAACAGTAAATAAAATAGTTAAATTAACTAAAA ANCESTOR CTTACCCCATGAGGGAWWAACAGTAAGTAWAAWAGTTMAAYPAACTAAAA [201-250] asio CGTCAGGTCAAGGTGT-GCTTATAGAATGGAAGAGATGGGCTACATTTTT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum CGTCAGGTCAAGGTGTAGCTAATAGAGTGGTAGAGATGGGCTACATTTTT coronatum CGTCAGGTCAAGGTGTAGCTAATAGAATGGCAGAGATGGGCTACATTTTT ditmarsi CGTCAGGTCAAGGTGTAGCTAATAGAGTGGTAGAGATGGGCTACATTTTT hernandesi CGTCAGGTCAAGGTGTAGCTAATAGAGTGGCAGAGATGGGCTACATTTTT mcallii CGTCAGGTCAAGGTGTAGCTAATAGAGTGGTAGAGATGGGCTACATTTTT modestum CGTCAGGTCAAGGTGTAGCTAATAGAGTGGCAGAGATGGGCTACATTTTT orbiculare CGTCAGGTCAAGGTGTAGCTAATAGAGTGGTAGAGATGGGCTACATTTTT platyrhinos CGTCAGGTCAAGGTGTAGCTAATAGAATGGCAGAGATGGGCTACATTTTT solare CGTCAGGTCAAGGTGTAGCTAATAGGGTGGAAGAGATGGGCTACATTTTT taurus CGTCAGGTCAAGGTGTAGCTAATAGAATGGCAGAGATGGGCTACATTTTT ANCESTOR CGTCAGGTCAAGGTGTAGCTWATAGAVTGGAAGAGATGGGCTACATTTTT [251-300] asio TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAA coronatum TCCGCGGTATTCTAACCGTGCAAAGGTAGCGTAANCACTTGTCCCCTAAA ditmarsi TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCTCCTAAA hernandesi TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAA mcallii TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAA modestum TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAA orbiculare TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCTCCTAAA platyrhinos TCCGCGGTATCCTAACCGTGCAAAGGTAGCGCAATCACTTGTCCCCTAAA solare TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCTCCTAAA taurus TCCGCGGTATCCTAACCGTGCAAAGGTAGCATAATCACTTGTCTTCTAAA ANCESTOR TCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCYCCTAAA [301-350] asio TAGAGACCTGTATGAATGGCTAAATGAGGACTTAACTGTCTCCTTTAATT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum TAGAGACTCGTATGAATGGCTAAATGAGGATTAATCTGTCTCCTTTAATT coronatum TAGGGACCTGTATGAATGGCTAAATGAGGACCAGACTGTCTCCTTTAATT ditmarsi TAGGGACTAGTATGAACGGCTAAATGAGGACCAATCTGTCTCCTTTAATT hernandesi TAGAGACTAGTATGAACGGCTAAATGAGGACTAATCTGTCTCCTTTAATT mcallii TAGAGACCTGTATGAATGGCTAAATGAGGACTAAACTGTCTCTTTTTATT modestum TAGAGACCAGTATGAACGGCTAAATGAGGACTAATCTGTCTCCTTTAATC orbiculare TAGGGACCAGTATGAACGGCTAAATGAGGACTAATCTGTCTCCTTTAATT platyrhinos TAGAGACCTGTATGAACGGCTAAATGAGGACTAAACTGTCTCTTTTTATT solare TAGAGACCAGTATGAACGGCTAAATGAGGACTTATCTGTCTCTTCTAATT taurus TAAAGACCTGTATGAACGGCTAAATGAGGGTTAATCTGTCTCCTTTAATT ANCESTOR TAGRGACCTGTATGAACGGCTAAATGAGGACTAAYCTGTCTCCTTTAAYH [351-400] asio AATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGCATAATATCATAAGA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATTTTATCATAAGA coronatum AATCAGTGAAACTGATCTACCAGTCCAAAAGCTGGTATTTCATCATAAGA ditmarsi AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATTATATCATAAGA hernandesi AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATTAAACCATAAGA mcallii AATCAGTAAAACTGATCTACCAGTACAAAAGCTGGTATTTTATCATAAGA modestum AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAATATCATAAGA orbiculare AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATTATATCATAAGA platyrhinos AATCAGTAAAACTGATCTACCAGTACAAAAGCTGGTGTTTTATCATAAGA solare AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGCATTTTACCATAAGA taurus AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATTCTACCATAAGA ANCESTOR AATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATWTYHCCATWAGA [401-450] asio CGAGAAGACCCTGTGGAGCTTTAAATCAAGAGCCAATACCAAAA--CTCC braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum CGAGAAGACCCTGTGGAGCTTTAAATTGAAGACCAAAACAACAAAACTCT coronatum CGAGAAGACCCTGTGGAGCTTTAAATTTAAAGNNAAAACTAATAAAGTCT ditmarsi CGAGAAGACCCTGTGGAGCTTTAAATTAAAAGCCAAAACATAAACCTCAC hernandesi CGAGAAGACCCTGTGGAGCTTTAAATTAAAAGCCAAAACAAAAACTCACC mcallii CGAGAAGACCCTGTGGAGCTTTAAATTAAAGGCCAAAACAACAAAGCT-T modestum CGAGAAGACCCTGTGGAACTTTAAATTTCTAGTCAAAACATATAA--ACC orbiculare CGAGAAGACCCTGTGGAGCTTTAAATTGAAGACCAAAACAGAAACTCTA- platyrhinos CGAGAAGACCCTGTGGAGCTTTAAATTAAAGGCCAAAACAACAAAACTCT solare CGAGAAGACCCTGTGGAGCTTTAAATTTTAAGCCAAAACATTTCTC-ACC taurus CGAGAAGACCCTGTGGAGCTTAAAATTAAAAGCCAAAACAGTGCTTTACC ANCESTOR CGAGAAGACCCTGTGGAGCTTTAAATYTAAARCCAAFE-FEAAAF-EACH [451-500] asio AACAAACCAATTA-----TGGCTTAAGACTTTAAGTTGGGGCGACTTCGG braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum TAAGTTTTAATTAC---ATGGCCTAAAATTTTAAGTTGGGGCGACTTCGG coronatum CACTAAACCCTAAATA--TGGCCCAAAATTTTAAGTTGGGGCGACTTCGG ditmarsi TAAACCCAAAATTAA--ATGGCCCAAGATTTTAAGTTGGGGCGACTTCGG hernandesi AAGCCCATAATTAA---ATGGCCCAAAATTTTAAGTTGGGGCGACTTCGG mcallii -ACCGAAC-TTAACTAAATGGCCTAAAATTTTAAGTTGGGGCGACTTCGG modestum TTACCAAGACTTACTTTATGGTCTAAAATTTTAAGTTGGGGCAACTTCGG orbiculare AAACCCA--ACTAA----TGGTCCAAAATTTTAAGTTGGGGCGACTTCGG platyrhinos -ACCAAACCTTAAATAA-TGGCCTAAAATTTTAAGTTGGGGCGACTTCGG solare CTAACATTA---ACTTTATGGCTAAAAATTTTAAGTTGGGGCGACTTCGG taurus AA--CCACAACTA-----TGACCAAAAATTTTAAGTTGGGGCGACTTCGG ANCESTOR AAAEJCAPAGTMMASCCATGGCCCAARATTTTAAGTTGGGGCGACTTCGG [501-550] asio AACAAAATATAACTTCCGAGCATAAAGGAAATTAACCTCACCAAGACCTA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum AACAAAACAAAACTTCCGAGCATAA-GGAAATTAACCTTATCAAGACCTA coronatum AACAAAACAAAACTTCCGAGCATAAAGGAAATTAACCTCATCAAGACCCA ditmarsi AACAAAACAAAACTTCCGAGCATAAAGGTATAACACCTCACCAAGACTAA hernandesi AACAAAACAAAACTTCCGAGCATAAAGGTTTA-CACCTCACCAAGACTAA mcallii AACAAAACAAAACTTCCGAGCATAAAGGAAATTTTCCTCACCTAGACCAA modestum AACAAAACAAAACTTCCGAGCATAAAGGAAATTAACCTTACCAAGACAAA orbiculare AACAAAACAAAACTTCCGAGCATAAAGGAACAA-ACCTCACCAAGACTAA platyrhinos AACAAAACAAAACTTCCGAGCATAAAGGAGATTCCCCTCACCTAGACCAA solare AACAAAACAAAACTTCCGAGCATAAAGGAAATTCACCTTTCCAAGACTAA taurus AACAAAACAAAACTTCCGAGCATAAAGGAACTTTACCTTAACAAGACCAA ANCESTOR AAMAAAACAAAACTTCCGAGCATAAEGRAHATHAAYCTTACCAAGACCAA [551-600] asio CAAGTCAAAGCAAAACTTGACCCAGTA--TAACTGATCATCGAACCAAGT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum CAAGTCAAAACAAAACTTGACCCAGTA--CAACTGAGCACCGAACCAAGT coronatum CAAGTCAAAACAAAACTTGACCCAGTA--TAACTGATCACCGAACCAAGT ditmarsi CAAGTCAAAGCAAAACCAGACCCAGTA--CAACTGACCACCGAACCAAGT hernandesi CAGGTCAAAACAAAACTAGACCCAGTA--CAACTGATCACCGAACCAAGT mcallii CAAGTCAAAGCAAAAATCGACCCAGTAC-ACACTGATCACCGAACCAAGT modestum CAAGTCAAAACAAAACTAGACCCAGTA--AAACTGACCACCGAACCAAGT orbiculare CAAGTCAAAACAAAACTAGACCCAGTA--TAACTGATTACCGAACCAAGT platyrhinos CAAGTCAAAGCAAAACTTGACCCAGTATAAAACTGACCACCGAACCAAGT solare CACGTCAAAGCAAAAATAGACCCAGTA--AAACTGATCACCGAACCAAGT taurus CAAGTCTAAACAAAACTAGACCCAGTA--CAACTGATCACCGAACCAAGT ANCESTOR CAAGTCAAAACAAAACTTGACCCAGTA--AAACTGATCACCGAACCAAGT [601-650] asio TACCCCAGGGATAACAGNGCAATCTTCTTCAAGAGTCCATATCGACAAGA braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCATATCGACAAGA coronatum TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCATATCGACAAGA ditmarsi TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCACATCGACAAGA hernandesi TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGA mcallii TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGA modestum TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCATATCGACAAGA orbiculare TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCATATCGACAAGA platyrhinos TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGA solare TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGA taurus TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCATATCGACAAGA ANCESTOR TACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTTCWTATCGACAAGA [651-700] asio AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAACGGTGCAGCAGCT braconnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN cornutum AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGAAGCT coronatum AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCAGCT ditmarsi AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCCGCT hernandesi AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAACAGCT mcallii AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAACAGCT modestum AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAACAGCT orbiculare AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCAGCT platyrhinos AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAACAGCT solare AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCAGCT taurus AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCAGCT ANCESTOR AGGTTTACGACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCCGCT [701-708] asio GTTAAAGG braconnieri NNNNNNNN cornutum ATTAAAGG coronatum ATTAAAGG ditmarsi ATTAAAGG hernandesi ATTAAAGG mcallii ATTAAANG modestum ATTAAAGG orbiculare ATTAAAGG platyrhinos ATTAAAGG solare ATTAAAGG taurus ATTAAAGG ANCESTOR ATTAAAGG [709-740] asio 00000120001200002000102012001200 braconnieri 020001{02}3111011000000002012120300 cornutum 00412112120210000001211011000310 coronatum 00402112120200031100010010001{23}01 ditmarsi 01100120021000002000003012101301 hernandesi 00202101120001022100000010101{23}01 mcallii 20411112120110110111211210020301 modestum 10311102120010100111011100010311 orbiculare 00202001120001022100000010101301 platyrhinos 003111{01}2120010110111011110010301 solare 00410112120010200110211010021401 taurus 02000123111011000000202012110100 ANCESTOR 0000?000000000?00000000000000000 ; ENDBLOCK; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 187-190 441-468 578-582; TYPESET * UNTITLED = unord: 1-708 711-717 719 721-724 726-728 730-733 735 737-740, ord: 709-710 718 720 725 729 734 736; WTSET * UNTITLED = 2: 1-708 710-724 726-728 730-731 735-740, 1: 709 725 729 732-734; ENDBLOCK;