Zeller, R.W. and Virata, M.J. and Cone, A.C. (2006). Predictable mosaic transgene expression in ascidian embryos using a simple electroporation device. In Press, Developmental Dynamics

Zeller, R.W., Weldon, D., Pellatiro, M. and Cone, A. C. (2006). Optimized GFP variants provide single cell resolution of transgene expression in ascidian embryos. Developmental Dynamics 235(2):456-467.

Cone, A.C. and Zeller, R.W. (2005). Using Ascidian Embryos to Study the Evolution of Developmental Gene Regulatory Networks. Canadian Journal of Zoology 83(1): 75-89.

Zeller, R.W. (2004). Generation and use of transgenic ascidian embryos. Methods in Cell Biology 74: 713-730.

Bower K.E., Zeller R.W., Wachsman W., Martinez T., McGuire KL., (2002) Correlation of transcriptional repression by p21SNFT with changes in DNA/NF-AT complex interactions. J. Biol Chem. 277(38):34967-34977.

Takahashi, H., Hotta, K., Erives, A., Di Gregorio, A., Zeller, R.W., Levine, M., and Satoh, N. (1999) Brachyury downstream notochord differentiation in the ascidian embryo. Genes & Dev. 13: 1519-1523.

Corbo, J.C., Levine, M. and Zeller,R.W. (1997). Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124: 589-602.

Zeller, R.W., Griffith, J.D., Moore, J.G., Kirchhamer, C.V., Britten, R.J.and Davidson, E.H. (1995). A multimerizing transcription factor of sea urchin embryos capable of looping DNA. Proc. Nat. Acad. Sci. USA. 92:2989-2993.

Zeller, R.W., Coffman, J.A., Harrington, M.G., Britten, R.J. and Davidson, E.H. (1995). SpGCF1, a sea urchin embryo DNA binding protein, exists as five nested variants encoded by a single mRNA. Dev. Biol. 169: 713-727.

Zeller, R.W., Britten, R.J. and Davidson, E.H. (1995). Developmental utilization of SpP3a1 and SpP3a2: Two proteins which recognize the same DNA target site in several sea urchin gene regulatory regions. Dev. Biol. 170: 75-82.

Zeller, R.W., Cameron, R.A., Franks, R.R., Britten, R.J. and Davidson, E.H. (1992). Territorial expression of 3 different trans-genes in early sea urchin embryos detected by a whole-mount fluorescence procedure. Dev. Biol. 151:382-390.

Calzone, F.J., Hoog, C., Teplow, D.B., Cutting, A.E., Zeller, R.W., Britten, R.J. and Davidson, E.H. (1991). Gene regulatory factors of the sea urchin embryo. I. Purification by affinity-chromatography and cloning of P3A2, a novel sea urchin DNA binding protein. Development 112:335-350.

Hough-Evans, B.R., Franks, R.R., Zeller, R.W., Britten, R.J. and Davidson, E.H. (1990). Negative spatial regulation of the lineage-specific CyIIIa actin gene in the sea urchin embryo. Development 110:41-50.

Costello, J.H., Strickler, J.R., Marrase, C., Trager, G. and Zeller, R. (1990). Grazing in a turbulent environment - behavioral response of a calanoid copepod, Centropages hamatus. Proc. Nat. Acad. Sci. USA. 87:1648-1652.

Book Chapters:

Zeller, R.W. (1997). Chapter 23, Marine Invertebrate Eggs. In Cells: A laboratory manual. D.L. Spector, R. Goldman, L. Leinwand, Editors. Cold Spring Harbor Laboratory Press.

Cameron, R.A., Zeller, R.W., Coffman, J.A. and Davidson, E.H. (1996). The analysis of lineage specific gene activity during sea urchin development. In Molecular Zoology: Advances, Strategies, and Protocols. Joan D. Ferraris and Stephen R. Palumbi, Editors. New York : Wiley-Liss.