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Papers |
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| (31) Lutz, K., N. Diaz, R.A. Edwards, F. Rohwer, S.T. Kelley, and J. Stoye. (2008) Taxonomic classification of short environmental DNA fragments. Nucleic Acids Research, In Press. | |
| (30) Desnues, C.D., B. Rodriguez-Brito, S. Rayhawk, S.T. Kelley, T. Tran, Matthew Haynes, H. Liu, D. Hall, F.E. Angly, R.A. Edwards, R.V. Thurber, P. Reid, J. Siefert, V. Souza, M. Breitbart, and F. Rohwer. (2008) Endemism of phages in modern stromatolites and thrombolites. Nature, 452: 340-343. | |
| (29) Ellis, D., R.W. Bizzoco, and S.T. Kelley. (2008) Halophilic Archaea identified in fumarole steam vapor from vents around the world. Environmental Microbiology, 10: 1582-1590. | |
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(28) Townsend T.M., E.R. Alegre, S.T. Kelley, J.J. Wiens, T.W. Reeder. (2008) Rapid Development of Multiple Nuclear Loci for Phylogenetic Analysis Using Genomic Resources. Molecular Phylogenetics and Evolution, 47: 129-142. |
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(27) Thackray, L.B., C.E. Wobus, K.A. Chachu, B. Liu, E.R. Alegre, K.S. Henderson, S.T. Kelley and H.W. Virgin. (2007) Murine noroviruses comprising a single genogroup
exhibit biological diversity
despite limited sequence divergence. Journal of Virology, 81: 10460-10473.
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(26) Lee, L., S. Tin and S.T. Kelley. (2007) Culture-independent analysis of bacterial diversity in a child-care facility. BMC Microbiology, 7: 27. |
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(25) Mathur, J., R.W. Bizzoco, D.G. Ellis, D.A. Lipson, A. Poole, R. Levine and S.T. Kelley. (2007) Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs. Applied and Environmental Microbiology, 73: 2612-2623. |
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(24) Lozupone, C.A., M. Hamady, S.T. Kelley and R. Knight. (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Applied and Environmental Microbiology, 73: 1576-1585. |
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(23) Angly, F.E…, S.T. Kelley (9th of 18),.. and F. Rohwer. (2006) Marine Viromes of Four Oceanic Regions. Public Library of Science (PLoS) Biology, 11: 2121-2131. |
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(22) Safaee, S., G.C. Weiser, E.F. Cassirer, R.R. Ramey and S.T. Kelley. (2006) Microbial diversity in bighorn sheep revealed by culture-independent methods. Journal of Wildlife Diseases, 42:545-555. |
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(21) Nguyen, T.X., E.R. Alegre and S.T. Kelley. (2006) Analysis of General Bacterial Porins: A Phylogenomic Case Study. Journal of Molecular Microbiology and Biotechnology, 11:291-301. |
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(20) Kelley S.T., E.F. Cassirer, G.C. Weiser and S. Safaee. (2006) Phylogenetic Diversity of Pasteurellaceae and Horizontal Gene Transfer of Leukotoxin in Wild and Domestic Sheep. Infection, Genetics and Evolution, 7:13-23. |
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(19) Ellis, D.G., R.W.
Bizzoco, Y. Maezato, J.N. Baggett, J.N. and S. T. Kelley.
(2005) Microscopic Examination of Acidic Abstract link: http://www.rsnz.org/publish/nzjmfr/2005/082.php |
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(18) Marquez, S.M., J.K. Harris, S. T. Kelley, J.W. Brown, S.C. Dawson, E.C. Roberts, and N.R. Pace. (2005) Structural implications of novel diversity in eucaryal RNase P RNA. RNA 11:739-751. |
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(17) Jensen J.L., A.J. Bohonak and S.T. Kelley. (2005) Isolation by Distance, Web Service. BMC Genetics 6:13-6. |
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(16) McManus, C.J. and S.T. Kelley. (2005) Molecular survey of aeroplane bacterial contamination. Journal of Applied Microbiology 99: 502-6. |
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(15) Angenent,
L.T., S.T.
Kelley, A. St.
Amand, N.R. Pace and M.T. Hernandez. (2005) Molecular identification
of potential pathogens in water and air of a hospital therapy pool. Proceedings of the National |
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(14) Breitbart, M., B. Felts, S.T. Kelley, J.M. Mahaffy, J. Nulton, P. Salamon and F. Rohwer.
(2004) Diversity and population structure of a near-shore marine-sediment
viral community. Proceedings of the Royal Society of |
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(13) Harris, J.K., S.T. Kelley and N.R. Pace. (2004) New perspective on uncultured bacterial phylogenetic division OP11. Applied and Environmental Microbiology 70:845-9. |
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(12) Kelley, S.T., U. Theisen, L.T. Angenent, A. St Amand and N.R. Pace. (2004) Molecular analysis of shower curtain biofilm microbes. Applied and Environmental Microbiology 70:4187-92. |
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(11) J.K. Harris, S.T. Kelley., G.B. Spiegelmam and N.R. Pace. (2003) The genetic core of the universal ancestor. Genome Research 13:407-412. |
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(10) Kelley, S.T., J.K. Harris and N.R. Pace. (2001) Evaluation and refinement of tmRNA structure using gene sequences from natural microbial communities. RNA 7: 1310-1316. |
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(9) Kelley, S.T., V.R. Akmaev and G.D. Stormo. (2000) Improved statistical methods reveal direct interactions between 16S and 23S ribosomal RNA. Nucleic Acids Research 28: 4938-4943. |
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(8) Akmaev, V.R., S.T. Kelley and G.D. Stormo. (2000) Phylogenetically enhanced statistical tools for RNA structure prediction. Bioinformatics 16: 501-512. |
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(7) Scott, V.L., S.T. Kelley and K. Strickler.
(2000) Reproductive biology of two Coelioxys
parasites in relation to their Megachile
hosts (Hymenoptera: Megachilidae). Annals
of the Entomological Society of |
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(6) Kelley, S.T., B.D. Farrell and J.B. Mitton. (2000) Effects of specialization on genetic differentiation in sister species of bark beetles. Heredity 84: 218-227. |
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(5) Ramey, R.R., S. T. Kelley, W.M. Boyce and B.D. Farrell. (2000). Phylogeny and host specificity of Psoroptic mange mites (Acarina: Psoroptidae) as indicated by ITS sequence data. Journal of Medical Entomology 37:791-6. |
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(4) Akmaev, V.R., S.T. Kelley and G.D. Stormo. (1999) A phylogenetic approach to RNA structure prediction. Intelligent Systems for Molecular Biology 1999 Proceedings:10-7. |
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(3) Kelley, S.T. and V.G. Thackray. (1999) Phylogenetic analyses reveal ancient duplication of estrogen receptor isoforms. Journal of Molecular Evolution 49: 609-614. |
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(2) Kelley,
S.T. and J.B. Mitton. (1998) Strong differentiation in mitochondrial
DNA of Dendroctonus brevicomis (Coleoptera: Scolytidae). Annals of the
Entomological Society of |
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(1) Kelley, S.T. and B.D. Farrell. (1998) Is specialization a dead-end?: The phylogeny of host use in Dendroctonus bark beetles (Coleoptera: Scolytidae). Evolution 52: 1731-1743. |